PatchDock and SymmDock: servers for rigid and symmetric docking | Zendy

Dina SchneidmanDuhovny | Zendy; Yoel Inbar | Zendy; Ruth Nussinov | Zendy; Haim J. Wolfson | Zendy

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PatchDock and SymmDock: servers for rigid and symmetric docking

Author(s) -

Dina SchneidmanDuhovny,

Yoel Inbar,

Ruth Nussinov,

Haim J. Wolfson

Publication year - 2005

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gki481

Subject(s) - server , docking (animal) , upload , web server , biology , protein data bank (rcsb pdb) , protein structure , computational biology , computer science , crystallography , the internet , operating system , biochemistry , chemistry , medicine , nursing

Here, we describe two freely available web servers for molecular docking. The PatchDock method performs structure prediction of protein-protein and protein-small molecule complexes. The SymmDock method predicts the structure of a homomultimer with cyclic symmetry given the structure of the monomeric unit. The inputs to the servers are either protein PDB codes or uploaded protein structures. The services are available at http://bioinfo3d.cs.tau.ac.il. The methods behind the servers are very efficient, allowing large-scale docking experiments.

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