InterProScan: protein domains identifier | Zendy

Emmanuel Quévillon | Zendy; V. Silventoinen | Zendy; S. Pillai | Zendy; Naomi Harte | Zendy; Nicola Mulder | Zendy; Rolf Apweiler | Zendy; Rodrigo López | Zendy

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InterProScan: protein domains identifier

Author(s) -

Emmanuel Quévillon,

V. Silventoinen,

S. Pillai,

Naomi Harte,

Nicola Mulder,

Rolf Apweiler,

Rodrigo López

Publication year - 2005

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gki442

Subject(s) - soap , uniprot , xml , perl , biology , world wide web , web service , identifier , application programming interface , computer science , library science , information retrieval , computational biology , genetics , programming language , gene

InterProScan [E. M. Zdobnov and R. Apweiler (2001) Bioinformatics, 17, 847-848] is a tool that combines different protein signature recognition methods from the InterPro [N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti et al. (2005) Nucleic Acids Res., 33, D201-D205] consortium member databases into one resource. At the time of writing there are 10 distinct publicly available databases in the application. Protein as well as DNA sequences can be analysed. A web-based version is accessible for academic and commercial organizations from the EBI (http://www.ebi.ac.uk/InterProScan/). In addition, a standalone Perl version and a SOAP Web Service [J. Snell, D. Tidwell and P. Kulchenko (2001) Programming Web Services with SOAP, 1st edn. O'Reilly Publishers, Sebastopol, CA, http://www.w3.org/TR/soap/] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results.

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