TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences | Zendy

Xiang Jia Min | Zendy; Gregory Butler | Zendy; Reginald Storms | Zendy; Adrian Tsang | Zendy

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TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences

Author(s) -

Xiang Jia Min,

Gregory Butler,

Reginald Storms,

Adrian Tsang

Publication year - 2005

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gki436

Subject(s) - biology , contig , web server , sequence (biology) , computational biology , genetics , coding region , complementary dna , gene , computer science , the internet , world wide web , genome

TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at https://fungalgenome.concordia.ca/tools/TargetIdentifier.html.

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