SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment | Zendy

V. M. Sobolev | Zendy; Eran Eyal | Zendy; Sergey Gerzon | Zendy; Vladimir Potapov | Zendy; Mariana Babor | Zendy; Jaime Prilusky | Zendy; Marvin Edelman | Zendy

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SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment

Author(s) -

V. M. Sobolev,

Eran Eyal,

Sergey Gerzon,

Vladimir Potapov,

Mariana Babor,

Jaime Prilusky,

Marvin Edelman

Publication year - 2005

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gki398

Subject(s) - suite , software suite , complementarity (molecular biology) , visualization , software , biology , java , protein structure prediction , computer science , computational biology , computational science , protein structure , bioinformatics , data mining , operating system , genetics , biochemistry , archaeology , history

We describe a suite of SPACE tools for analysis and prediction of structures of biomolecules and their complexes. LPC/CSU software provides a common definition of inter-atomic contacts and complementarity of contacting surfaces to analyze protein structure and complexes. In the current version of LPC/CSU, analyses of water molecules and nucleic acids have been added, together with improved and expanded visualization options using Chime or Java based Jmol. The SPACE suite includes servers and programs for: structural analysis of point mutations (MutaProt); side chain modeling based on surface complementarity (SCCOMP); building a crystal environment and analysis of crystal contacts (CryCo); construction and analysis of protein contact maps (CMA) and molecular docking software (LIGIN). The SPACE suite is accessed at http://ligin.weizmann.ac.il/space.

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