The PEDANT genome database in 2005 | Zendy

M. Riley | Zendy; Thorsten Schmidt | Zendy; Christian Wagner | Zendy; HansWerner Mewes | Zendy; Dmitrij Frishman | Zendy

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The PEDANT genome database in 2005

Author(s) -

M. Riley,

Thorsten Schmidt,

Christian Wagner,

HansWerner Mewes,

Dmitrij Frishman

Publication year - 2004

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gki019

Subject(s) - annotation , genome , biology , genome project , context (archaeology) , computational biology , gene annotation , reference genome , human genome , genomics , database , gene , genetics , computer science , paleontology

The PEDANT genome database (http://pedant.gsf.de) contains pre-computed bioinformatics analyses of publicly available genomes. Its main mission is to provide robust automatic annotation of the vast majority of amino acid sequences, which have not been subjected to in-depth manual curation by human experts in high-quality protein sequence databases. By design PEDANT annotation is genome-oriented, making it possible to explore genomic context of gene products, and evaluate functional and structural content of genomes using a category-based query mechanism. At present, the PEDANT database contains exhaustive annotation of over 1,240,000 proteins from 270 eubacterial, 23 archeal and 41 eukaryotic genomes.

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