STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins | Zendy

Matthias Heinig | Zendy; Dmitrij Frishman | Zendy

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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

Author(s) -

Matthias Heinig,

Dmitrij Frishman

Publication year - 2004

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkh429

Subject(s) - stride , web server , protein data bank (rcsb pdb) , biology , upload , visualization , computer science , database , bioinformatics , the internet , data mining , world wide web , biochemistry , computer security

STRIDE is a software tool for secondary structure assignment from atomic resolution protein structures. It implements a knowledge-based algorithm that makes combined use of hydrogen bond energy and statistically derived backbone torsional angle information and is optimized to return resulting assignments in maximal agreement with crystallographers' designations. The STRIDE web server provides access to this tool and allows visualization of the secondary structure, as well as contact and Ramachandran maps for any file uploaded by the user with atomic coordinates in the Protein Data Bank (PDB) format. A searchable database of STRIDE assignments for the latest PDB release is also provided. The STRIDE server is accessible from http://webclu.bio.wzw.tum.de/stride/.

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