DBSubLoc: database of protein subcellular localization | Zendy

Tingting Guo | Zendy

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DBSubLoc: database of protein subcellular localization

Author(s) -

Tingting Guo

Publication year - 2003

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkh109

Subject(s) - annotation , biology , subcellular localization , genome , computational biology , database , protein sequencing , protein structure database , protein subcellular localization prediction , sequence database , information retrieval , bioinformatics , genetics , computer science , peptide sequence , gene

We have built a protein subcellular localization annotation database, the DBSubLoc database, which is available at http://www.bioinfo.tsinghua. edu.cn/dbsubloc.html. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment, non-redundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60,000 protein sequences including approximately 30,000 protein sequences in the non-redundant data sets. Online download, search and Blast tools are also available.

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