SLAM web server for comparative gene finding and alignment | Zendy

Simon Cawley | Zendy

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SLAM web server for comparative gene finding and alignment

Author(s) -

Simon Cawley

Publication year - 2003

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkg583

Subject(s) - biology , web server , genome , gene , web site , computational biology , coding (social sciences) , sequence alignment , genetics , the internet , computer science , world wide web , peptide sequence , statistics , mathematics

SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.

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