The SNP Consortium website: past, present and future | Zendy

Guðmundur Á. Þórisson | Zendy

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The SNP Consortium website: past, present and future

Author(s) -

Guðmundur Á. Þórisson

Publication year - 2003

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkg052

Subject(s) - snp , tag snp , biology , single nucleotide polymorphism , genome browser , context (archaeology) , molecular inversion probe , file transfer protocol , download , genetics , genome , world wide web , the internet , computer science , genomics , genotype , gene , paleontology

The SNP Consortium website (http://snp.cshl.org) has undergone many changes since its initial conception three years ago. The database back end has been changed from the venerable ACeDB to the more scalable MySQL engine. Users can access the data via gene or single nucleotide polymorphism (SNP) keyword searches and browse or dump SNP data to textfiles. A graphical genome browsing interface shows SNPs mapped onto the genome assembly in the context of externally available gene predictions and other features. SNP allele frequency and genotype data are available via FTP-download and on individual SNP report web pages. SNP linkage maps are available for download and for browsing in a comparative map viewer. All software components of the data coordinating center (DCC) website (http://snp.cshl.org) are open source.

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