SPICA: Swiss portal for immune cell analysis | Zendy

Massimo Andreatta | Zendy; Fabrice P.A. David | Zendy; Christian Iseli | Zendy; Nicolas Guex | Zendy; Santiago J. Carmona | Zendy

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SPICA: Swiss portal for immune cell analysis

Author(s) -

Massimo Andreatta,

Fabrice P.A. David,

Christian Iseli,

Nicolas Guex,

Santiago J. Carmona

Publication year - 2021

Publication title -

nucleic acids research

Language(s) - Uncategorized

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkab1055

Subject(s) - spica , context (archaeology) , biology , immune system , cell , cell type , computational biology , transcriptome , immunology , genetics , gene expression , physics , gene , paleontology , optics

Single-cell transcriptomics allows the study of immune cell heterogeneity at an unprecedented level of resolution. The Swiss portal for immune cell analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells. In contrast to other single-cell databases, SPICA hosts curated, cell type-specific reference atlases that describe immune cell states at high resolution, and published single-cell datasets analysed in the context of these atlases. Additionally, users can privately analyse their own data in the context of existing atlases and contribute to the SPICA database. SPICA is available at https://spica.unil.ch.

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