Open AccessThe IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
Author(s) -
I-Min A. Chen,
Ken Chu,
Krishna Palaniappan,
Anna Ratner,
Jinghua Huang,
Marcel Huntemann,
Patrick Hajek,
Stephan Ritter,
Neha Varghese,
R. Seshadri,
Simon Roux,
Tanja Woyke,
Emiley A. EloeFadrosh,
Natalia Ivanova,
Nikos C. Kyrpides
Publication year - 2020
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gkaa939
Subject(s) - biology , img , genome , metagenomics , documentation , pipeline (software) , computational biology , annotation , bioinformatics , computer science , genetics , gene , operating system
The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img.jgi.doe.gov/m/) contains annotated isolate genome and metagenome datasets sequenced at the DOE's Joint Genome Institute (JGI), submitted by external users, or imported from public sources such as NCBI. IMG v 6.0 includes advanced search functions and a new tool for statistical analysis of mixed sets of genomes and metagenome bins. The new IMG web user interface also has a new Help page with additional documentation and webinar tutorials to help users better understand how to use various IMG functions and tools for their research. New datasets have been processed with the prokaryotic annotation pipeline v.5, which includes extended protein family assignments.
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