Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization | Zendy

Joachim Wolff | Zendy; Leily Rabbani | Zendy; Ralf Gilsbach | Zendy; Gautier Richard | Zendy; Thomas Manke | Zendy; Rolf Backofen | Zendy; Björn Grüning | Zendy

Open Access

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization

Author(s) -

Joachim Wolff,

Leily Rabbani,

Ralf Gilsbach,

Gautier Richard,

Thomas Manke,

Rolf Backofen,

Björn Grüning

Publication year - 2020

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkaa220

Subject(s) - workflow , visualization , interface (matter) , documentation , graphical user interface , astrophysics , galaxy , computer science , data visualization , biology , world wide web , database , data mining , physics , operating system , bubble , maximum bubble pressure method

The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since the last publication, Galaxy HiCExplorer has been expanded considerably with new tools to facilitate the analysis of cHi-C and to provide an in-depth analysis of Hi-C data. Moreover, it supports the analysis of scHi-C data by offering a broad range of tools. With the help of the standard graphical user interface of Galaxy, presented workflows, extensive documentation and tutorials, novices as well as Hi-C experts are supported in their Hi-C data analysis with Galaxy HiCExplorer.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research