EXProt: a database for proteins with an experimentally verified function | Zendy

Björn M. Ursing | Zendy; Frank H. J. van Enckevort | Zendy; Jack A. M. Leunissen | Zendy; Roland J. Siezen | Zendy

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EXProt: a database for proteins with an experimentally verified function

Author(s) -

Björn M. Ursing,

Frank H. J. van Enckevort,

Jack A. M. Leunissen,

Roland J. Siezen

Publication year - 2002

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/30.1.50

Subject(s) - annotation , biology , proteome , genome , database , computational biology , function (biology) , genome project , sequence database , genetics , gene , computer science

EXProt is a non-redundant protein database containing a selection of entries from genome annotation projects and public databases, aimed at including only proteins with an experimentally verified function. In EXProt release 2.0 we have collected entries from the Pseudomonas aeruginosa community annotation project (PseudoCAP), the Escherichia coli genome and proteome database (GenProtEC) and the translated coding sequences from the Prokaryotes division of EMBL nucleotide sequence database, which are described as having an experimentally verified function. Each entry in EXProt has a unique ID number and contains information about the species, amino acid sequence, functional annotation and, in most cases, links to references in MEDLINE/PubMed and to the entry in the original database. EXProt is indexed in SRS at CMBI (http://www.cmbi.kun.nl/srs/) and can be searched with BLAST and FASTA through the EXProt web page (http://www.cmbi.kun.nl/EXProt/).

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