The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments | Zendy

János Murvai | Zendy; Kristian Vlahoviček | Zendy; Endre Barta | Zendy; S. Pongor | Zendy

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The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments

Author(s) -

János Murvai,

Kristian Vlahoviček,

Endre Barta,

S. Pongor

Publication year - 2001

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/29.1.58

Subject(s) - file transfer protocol , biology , sequence (biology) , domain (mathematical analysis) , protein domain , computational biology , sequence database , bioinformatics , information retrieval , the internet , computer science , genetics , world wide web , mathematical analysis , mathematics , gene

SBASE 8.0 is the eighth release of the SBASE library of protein domain sequences that contains 294 898 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to most major sequence databases and sequence pattern collections. The entries are clustered into over 2005 statistically validated domain groups (SBASE-A) and 595 non-validated groups (SBASE-B), provided with several WWW-based search and browsing facilities for online use. A domain-search facility was developed, based on non-parametric pattern recognition methods, including artificial neural networks. SBASE 8.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it. Automated searching of SBASE can be carried out with the WWW servers http://www.icgeb.trieste.it/sbase/ and http://sbase.abc. hu/sbase/.

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