PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) | Zendy

Takio Noguchi | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

Author(s) -

Takio Noguchi

Publication year - 2001

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/29.1.219

Subject(s) - protein data bank (rcsb pdb) , protein data bank , structural classification of proteins database , interface (matter) , biology , computer science , selection (genetic algorithm) , similarity (geometry) , database , protein structure , data mining , bioinformatics , information retrieval , biochemistry , artificial intelligence , pulmonary surfactant , gibbs isotherm , image (mathematics)

PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configured according to the user's requirement. The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity. One can obtain a representative list and classification data of protein chains from the system. The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/papia/).

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research