ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons | Zendy

F. Corpet | Zendy

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ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

Author(s) -

F. Corpet

Publication year - 2000

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/28.1.267

Subject(s) - biology , protein domain , genome , computational biology , domain (mathematical analysis) , uniprot , sequence alignment , sequence database , sequence analysis , protein sequencing , protein family , consistency (knowledge bases) , genetics , bioinformatics , peptide sequence , computer science , gene , mathematical analysis , mathematics , artificial intelligence

ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. toulouse.inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

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