Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences | Zendy

Cecilia Lanave | Zendy

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Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences

Author(s) -

Cecilia Lanave

Publication year - 2000

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/28.1.153

Subject(s) - biology , mitochondrial dna , gene , computational biology , genetics , sequence alignment , coding region , database , bioinformatics , peptide sequence , computer science

The AMmtDB database (http://bio-www.ba.cnr.it:8000/srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNAs. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. AMmtDB data selected through SRS can be viewed and managed using GeneDoc or other programs for the management of multi-aligned data depending on the user's operative system. The multiple alignments have been produced with CLUSTALW and PILEUP programs and then carefully optimized manually.

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