O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins | Zendy

Ramneek Gupta | Zendy; Heidi Birch | Zendy; K. Rapacki | Zendy; Søren Brunak | Zendy; Jan Erik Hansen | Zendy

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O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins

Author(s) -

Ramneek Gupta,

Heidi Birch,

K. Rapacki,

Søren Brunak,

Jan Erik Hansen

Publication year - 1999

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/27.1.370

Subject(s) - glycan , biology , database , glycosylation , protein data bank (rcsb pdb) , uniprot , glycoprotein , sequence (biology) , sequence database , computational biology , bioinformatics , genetics , biochemistry , computer science , gene

O-GLYCBASE is a database of glycoproteins with O-linked glycosylation sites. Entries with at least one experimentally verified O-glycosylation site have been compiled from protein sequence databases and literature. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 4.0 contains 179 protein entries, an approximate 15% increase over the last version. Sequence logos representing the acceptor specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/

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