TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation | Zendy

Edgar Wingender | Zendy; Alexander Kel | Zendy; O. V. Kel | Zendy; Holger Karas | Zendy; T. Heinemeyer | Zendy; Peter Dietze | Zendy; Rainer Knüppel | Zendy; A. G. Romaschenko | Zendy; Н. А. Колчанов | Zendy

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TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation

Author(s) -

Edgar Wingender,

Alexander Kel,

O. V. Kel,

Holger Karas,

T. Heinemeyer,

Peter Dietze,

Rainer Knüppel,

A. G. Romaschenko,

Н. А. Колчанов

Publication year - 1997

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/25.1.265

Subject(s) - biology , transcription factor , transcriptional regulation , transcription (linguistics) , database , regulatory sequence , genetics , computational biology , gene , computer science , linguistics , philosophy

Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites. TRRD (Transcription Regulatory Region Database) collects information about complete regulatory regions, their regulation properties and architecture. COMPEL comprises specific information on composite regulatory elements. Here, we describe the present status of these databases and the first steps towards their federation.

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