The translational signal database, TransTerm: more organisms, complete genomes | Zendy

Mark E. Dalphin | Zendy; Chris M. Brown | Zendy; Peter A. Stockwell | Zendy; Warren P. Tate | Zendy

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The translational signal database, TransTerm: more organisms, complete genomes

Author(s) -

Mark E. Dalphin,

Chris M. Brown,

Peter A. Stockwell,

Warren P. Tate

Publication year - 1997

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/25.1.246

Subject(s) - methanococcus , biology , genbank , genome , mycoplasma genitalium , genetics , coding region , saccharomyces cerevisiae , stop codon , computational biology , database , archaea , gene , computer science , chlamydia trachomatis , immunology

TransTerm is a database of initiation and termination sequence contexts from more than 250 organisms listed in GenBank, including the four complete genomes:Haemophilus influenzae, Methanococcus jannaschii, Mycoplasma genitalium,and Saccharomyces cerevisiae. For the current release, more than 60 000 coding sequences were analysed. The tabulated data include initiation and termination contexts organised by species along with quantitative parameters about individual coding sequences (length, %GC, GC3, Nc and CAI). There are also tables of initiation- and termination-region nucleotide-frequencies, codon usage tables and summaries of stop signal usage. TransTerm is available on the World Wide Web at: http://biochem.otago.ac.nz:800/Transterm/homepage.h tml

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