The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes | Zendy

Carol A. Harger | Zendy; Marian Skupski | Zendy; Eileen Allen | Zendy; Carla Clark | Zendy; Diarmuid Crowley | Zendy; E Dickinson | Zendy; David Easley | Zendy; A. Espinosa-Lujan | Zendy; Andrew Farmer | Zendy; Chris Fields | Zendy; L. Flores | Zendy; Lawrence A. Harris | Zendy; G Keen | Zendy; Mark C. Manning | Zendy; M. McLeod | Zendy; J. J. O’Neill | Zendy; M. Pumilia | Zendy; R. Reinert | Zendy; D. Rider | Zendy; J. Rohrlich | Zendy; Yair Romero | Zendy; J. Schwertfeger | Zendy; Gustavo A. Seluja | Zendy; Adam Siepel | Zendy; Gautam B. Singh | Zendy; Liam Smyth | Zendy; D. Stamper | Zendy; Jacob Stein | Zendy; Ron Suggs | Zendy; R. Takkallapalli | Zendy; Nina Thayer | Zendy; G. D. Thompson | Zendy; Christopher S. Walsh | Zendy; Frank Wedgeworth | Zendy; Péter Schád | Zendy

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The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes

Author(s) -

Carol A. Harger,

Marian Skupski,

Eileen Allen,

Carla Clark,

Diarmuid Crowley,

E Dickinson,

David Easley,

A. Espinosa-Lujan,

Andrew Farmer,

Chris Fields,

L. Flores,

Lawrence A. Harris,

G Keen,

Mark C. Manning,

M. McLeod,

J. J. O’Neill,

M. Pumilia,

R. Reinert,

D. Rider,

J. Rohrlich,

Yair Romero,

J. Schwertfeger,

Gustavo A. Seluja,

Adam Siepel,

Gautam B. Singh,

Liam Smyth,

D. Stamper,

Jacob Stein,

Ron Suggs,

R. Takkallapalli,

Nina Thayer,

G. D. Thompson,

Christopher S. Walsh,

Frank Wedgeworth,

Péter Schád

Publication year - 1997

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/25.1.18

Subject(s) - annotation , relational database , sql , sequence database , genome , database , biology , sequence (biology) , computer science , information retrieval , flat file database , bioinformatics , genetics , data file , gene , unix file types , stub file

The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. Data contributions, including both original sequence submissions and community annotation, are being accomplished through the use of a graphical client-server interface tool, the GSDB Annotator, and via GIO (GSDB Input/Output) files. Data retrieval services are being provided through a new Web Query Tool and direct SQL. All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community annotation.

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