TransTerm: a database of translational signals | Zendy

Mark E. Dalphin | Zendy; Chris M. Brown | Zendy; Peter A. Stockwell | Zendy; Warren P. Tate | Zendy

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TransTerm: a database of translational signals

Author(s) -

Mark E. Dalphin,

Chris M. Brown,

Peter A. Stockwell,

Warren P. Tate

Publication year - 1996

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/24.1.216

Subject(s) - biology , sequence (biology) , start codon , stop codon , coding region , codon usage bias , genetics , context (archaeology) , database , computational biology , base sequence , gene , computer science , genome , paleontology

The TransTerm database of sequence contexts of stop and start codons has been expanded to include approximately 50% more species than last year's release. It now contains 148 organisms and >39 500 coding sequences; it is now available on the World Wide Web. The database includes: (i) initiation and termination sequence contexts organized by species; (ii) summary parameters about the individual sequences (sequence length, GC%, GC3, Nc, CAI) in addition to tables of base frequencies for each species' stop and start codon sequence context; (iii) species codon usage tables; and (iv) summary tables of stop signal frequency.

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