In vitro transcribed SV4O minichromosomes, as the bulk mlnichromosomes, have a low level of unconstrained negative supercoils
Author(s) -
Mordechai Choder,
Yosef Aloni
Publication year - 1988
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/16.3.895
Subject(s) - dna supercoil , minichromosome , biology , topoisomerase , dna , nucleosome , topology (electrical circuits) , plasmid , microbiology and biotechnology , biophysics , genetics , physics , chromatin , dna replication , mathematics , combinatorics
The method for detecting the small fraction (1%) of transcriptionally active SV40 minichromosomes, in the presence of the bulk minichromosomes, (14) has been applied to directly analyze the topology of transcribed and non-transcribed minichromosomal DNA. We show here that DNA of both transcribed and non-transcribed minichromosomes have the same number of supercoils which are constrained by nucleosomes. In addition, minichromosomal DNA of both fractions have a low level of unconstrained supercoils (1-2 extra supercoils) which can be relaxed in vitro by topoisomerase I.
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