MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding | Zendy

Yukuto Sato | Zendy; Masaki Miya | Zendy; Tsukasa Fukunaga | Zendy; Tetsuya Sado | Zendy; Wataru Iwasaki | Zendy

Open Access

MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding

Author(s) -

Yukuto Sato,

Masaki Miya,

Tsukasa Fukunaga,

Tetsuya Sado,

Wataru Iwasaki

Publication year - 2018

Publication title -

molecular biology and evolution

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 6.637

H-Index - 218

eISSN - 1537-1719

pISSN - 0737-4038

DOI - 10.1093/molbev/msy074

Subject(s) - biology , mitochondrial dna , pipeline (software) , fish <actinopterygii> , genome , annotation , evolutionary biology , vertebrate , computational biology , ecology , database , bioinformatics , fishery , genetics , gene , computer science , programming language

Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we describe implementation of MiFish pipeline for metabarcoding analysis of fish mitochondrial environmental DNA, which is a fast-emerging and powerful technology in fish studies. MitoFish, MitoAnnotator, and MiFish pipeline constitute a key platform for studies of fish evolution, ecology, and conservation, and are freely available at http://mitofish.aori.u-tokyo.ac.jp/ (last accessed April 7th, 2018).

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