RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics | Zendy

Frédéric Jauffrit | Zendy; Simon Penel | Zendy; Stéphane Delmotte | Zendy; C. Rey | Zendy; Damien M. de Vienne | Zendy; Manolo Gouy | Zendy; JeanPhilippe Charrier | Zendy; JeanPierre Flandrois | Zendy; Céline BrochierArmanet | Zendy

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RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics

Author(s) -

Frédéric Jauffrit,

Simon Penel,

Stéphane Delmotte,

C. Rey,

Damien M. de Vienne,

Manolo Gouy,

JeanPhilippe Charrier,

JeanPierre Flandrois,

Céline BrochierArmanet

Publication year - 2016

Publication title -

molecular biology and evolution

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 6.637

H-Index - 218

eISSN - 1537-1719

pISSN - 0737-4038

DOI - 10.1093/molbev/msw088

Subject(s) - biology , genome , systematics , ribosomal rna , ribosomal protein , phylum , computational biology , database , genetics , evolutionary biology , gene , ribosome , taxonomy (biology) , rna , computer science , ecology

Ribosomal proteins (r-proteins) are increasingly used as an alternative to ribosomal rRNA for prokaryotic systematics. However, their routine use is difficult because r-proteins are often not or wrongly annotated in complete genome sequences, and there is currently no dedicated exhaustive database of r-proteins. RiboDB aims at fulfilling this gap. This weekly updated comprehensive database allows the fast and easy retrieval of r-protein sequences from publicly available complete prokaryotic genome sequences. The current version of RiboDB contains 90 r-proteins from 3,750 prokaryotic complete genomes encompassing 38 phyla/major classes and 1,759 different species. RiboDB is accessible at http://ribodb.univ-lyon1.fr and through ACNUC interfaces.

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