PAMLX: A Graphical User Interface for PAML | Zendy

Bing Xu | Zendy; Yang Zhang | Zendy

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PAMLX: A Graphical User Interface for PAML

Author(s) -

Bing Xu,

Yang Zhang

Publication year - 2013

Publication title -

molecular biology and evolution

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 6.637

H-Index - 218

eISSN - 1537-1719

pISSN - 0737-4038

DOI - 10.1093/molbev/mst179

Subject(s) - biology , graphical user interface , phylogenetic tree , interface (matter) , software , programming language , computer science , gene , genetics , pulmonary surfactant , biochemistry , gibbs isotherm

This note announces pamlX, a graphical user interface/front end for the paml (for Phylogenetic Analysis by Maximum Likelihood) program package (Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556; Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591). pamlX is written in C++ using the Qt library and communicates with paml programs through files. It can be used to create, edit, and print control files for paml programs and to launch paml runs. The interface is available for free download at http://abacus.gene.ucl.ac.uk/software/paml.html.

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