ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data | Zendy

Shuangbin Xu | Zendy; Zehan Dai | Zendy; Pingfan Guo | Zendy; Xiaocong Fu | Zendy; Shanshan Liu | Zendy; Lang Zhou | Zendy; Wenli Tang | Zendy; Tingze Feng | Zendy; Meijun Chen | Zendy; Li Zhan | Zendy; Tianzhi Wu | Zendy; Erqiang Hu | Zendy; Yong Jiang | Zendy; Xiaochen Bo | Zendy; Guangchuang Yu | Zendy

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ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data

Author(s) -

Shuangbin Xu,

Zehan Dai,

Pingfan Guo,

Xiaocong Fu,

Shanshan Liu,

Lang Zhou,

Wenli Tang,

Tingze Feng,

Meijun Chen,

Li Zhan,

Tianzhi Wu,

Erqiang Hu,

Yong Jiang,

Xiaochen Bo,

Guangchuang Yu

Publication year - 2021

Publication title -

molecular biology and evolution

Language(s) - Uncategorized

Resource type - Journals

SCImago Journal Rank - 6.637

H-Index - 218

eISSN - 1537-1719

pISSN - 0737-4038

DOI - 10.1093/molbev/msab166

Subject(s) - phylogenetic tree , visualization , tree (set theory) , biology , context (archaeology) , computer science , data visualization , information visualization , domain (mathematical analysis) , phylogenetic comparative methods , data mining , paleontology , mathematical analysis , biochemistry , mathematics , gene

We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic tree in a circular or rectangular layout (https://www.bioconductor.org/packages/ggtreeExtra). The package supports more data types and visualization methods than other tools. It supports using the grammar of graphics syntax to present data on a tree with richly annotated layers and allows evolutionary statistics inferred by commonly used software to be integrated and visualized with external data. GgtreeExtra is a universal tool for tree data visualization. It extends the applications of the phylogenetic tree in different disciplines by making more domain-specific data to be available to visualize and interpret in the evolutionary context.

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