The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses | Zendy

Andrew E. Webb | Zendy; Jared Knoblauch | Zendy; Nitesh Sabankar | Zendy; Apeksha Sukesh Kallur | Zendy; Jody Hey | Zendy; Arun Sethuraman | Zendy

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The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses

Author(s) -

Andrew E. Webb,

Jared Knoblauch,

Nitesh Sabankar,

Apeksha Sukesh Kallur,

Jody Hey,

Arun Sethuraman

Publication year - 2021

Publication title -

molecular biology and evolution

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 6.637

H-Index - 218

eISSN - 1537-1719

pISSN - 0737-4038

DOI - 10.1093/molbev/msab113

Subject(s) - biology , pipeline (software) , software , population , evolutionary biology , computational biology , bioinformatics , programming language , computer science , demography , sociology

The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire workflows, including input preparation, file format conversion, various population genomic analyses, and output generation. The platform has also been developed with reproducibility and extensibility of analyses in mind. The PPP is an open-source package that is available for download and use at https://ppp.readthedocs.io/en/latest/PPP_pages/install.html.

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