SPAGHETTI: Simulation Software to Test Genetic Mapping Programs | Zendy

Nicholas A. Tinker | Zendy

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SPAGHETTI: Simulation Software to Test Genetic Mapping Programs

Author(s) -

Nicholas A. Tinker

Publication year - 2009

Publication title -

journal of heredity

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.99

H-Index - 92

eISSN - 1471-8505

pISSN - 0022-1503

DOI - 10.1093/jhered/esp109

Subject(s) - executable , software , biology , source code , sample (material) , linkage (software) , computer science , code (set theory) , programming language , computational biology , operating system , genetics , gene , set (abstract data type) , chemistry , chromatography

SPAGHETTI is a computer program to simulate genetic populations with segregating molecular markers that are influenced by "real-life" complications such as duplicated loci and segregation distortion. It produces output that is readable by popular mapping software, and it can be used to demonstrate or test methods for constructing genetic linkage maps. The source code, sample files, instructions for use, and an executable version compatible with MS Windows are available for free from http://gnomad.agr.ca/software/spaghetti.

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