GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection | Zendy

Sylvain Piry | Zendy; Alexandre Alapetite | Zendy; JeanMarie Cornuet | Zendy; David Paetkau | Zendy; Luc Baudouin | Zendy; Arnaud Estoup | Zendy

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GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection

Author(s) -

Sylvain Piry,

Alexandre Alapetite,

JeanMarie Cornuet,

David Paetkau,

Luc Baudouin,

Arnaud Estoup

Publication year - 2004

Publication title -

journal of heredity

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.99

H-Index - 92

eISSN - 1471-8505

pISSN - 0022-1503

DOI - 10.1093/jhered/esh074

Subject(s) - resampling , software , biology , population , task (project management) , ploidy , interface (matter) , computer science , genetics , artificial intelligence , demography , gene , engineering , pulmonary surfactant , biochemistry , gibbs isotherm , systems engineering , sociology , programming language

GENECLASS2 is a software that computes various genetic assignment criteria to assign or exclude reference populations as the origin of diploid or haploid individuals, as well as of groups of individuals, on the basis of multilocus genotype data. In addition to traditional assignment aims, the program allows the specific task of first-generation migrant detection. It includes several Monte Carlo resampling algorithms that compute for each individual its probability of belonging to each reference population or to be a resident (i.e., not a first-generation migrant) in the population where it was sampled. A user-friendly interface facilitates the treatment of large datasets.

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