Computer note. POPDIST, version 1.1.1: a program to calculate population genetic distance and identity measures | Zendy

Bernt Guldbrandtsen | Zendy; J Tokiuk | Zendy; Volker Loeschcke | Zendy

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Computer note. POPDIST, version 1.1.1: a program to calculate population genetic distance and identity measures

Author(s) -

Bernt Guldbrandtsen,

J Tokiuk,

Volker Loeschcke

Publication year - 2000

Publication title -

journal of heredity

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.99

H-Index - 92

eISSN - 1471-8505

pISSN - 0022-1503

DOI - 10.1093/jhered/91.2.178

Subject(s) - unix , identity (music) , biology , genetic similarity , measure (data warehouse) , population , polyploid , computer program , similarity (geometry) , the internet , code (set theory) , source code , genetic distance , computer science , genetics , programming language , genetic variation , software , data mining , genome , world wide web , artificial intelligence , demography , gene , physics , sociology , acoustics , image (mathematics) , set (abstract data type) , genetic diversity

Acknowledgments: We thank the European Science Foundation for supporting the visit of JT to Aarhus (grant no. ESF-POBI/95Y), the Danish Natural Science Research council for supporting parts of the project (grant no. 9701412 to VL). Dept. of Genetics and Ecology, Aarhus University, Ny Munkegade, Bldg. 540, DK{8000 Aarhus C, Denmark, Phone: (+45)8942-3268, Fax: (+45)86127191, e-mail: volker.loeschcke@biology.aau.dk Running title. POPDIST: A Genetic Distance Program Key words and phrases. Genetic distance, genetic identity, program 1 Abstract In this note we announce the release of POPDIST version 1.1.1. This is a program to calculate genetic distance and identity measures, includ- ing the measure of Tomiuk and Loeschcke, which also allows calculation of genetic similarity measures for comparisons involving polyploid and parthenogenetic populations. The program is available for free from the Internet as C source code, or compiled for the Macintosh, MS Windows 95, and various brands of UNIX. 2 POPDIST is a program for the calculation of various population genetic dis- tance and identity measures. It uses an input,le format that is similar to the input format used by the GENEPOP software (Raymond and Rousset 1995), and,les created for GENEPOP for diploid populations are read unmodied,by

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