A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds | Zendy

Patrick Munk | Zendy; Vibe Dalhoff Andersen | Zendy; Leonardo de Knegt | Zendy; Marie Stengaard Jensen | Zendy; Berith Elkær Knudsen | Zendy; Oksana Lukjančenko | Zendy; Hanne Mordhorst | Zendy; Julie Clasen | Zendy; Yvonne Agersø | Zendy; Anders Folkesson | Zendy; Sünje Johanna Pamp | Zendy; Håkan Vigre | Zendy; Frank M. Aarestrup | Zendy

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A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds

Author(s) -

Patrick Munk,

Vibe Dalhoff Andersen,

Leonardo de Knegt,

Marie Stengaard Jensen,

Berith Elkær Knudsen,

Oksana Lukjančenko,

Hanne Mordhorst,

Julie Clasen,

Yvonne Agersø,

Anders Folkesson,

Sünje Johanna Pamp,

Håkan Vigre,

Frank M. Aarestrup

Publication year - 2016

Publication title -

journal of antimicrobial chemotherapy

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.124

H-Index - 194

eISSN - 1460-2091

pISSN - 0305-7453

DOI - 10.1093/jac/dkw415

Subject(s) - metagenomics , biology , sampling (signal processing) , antibiotic resistance , antimicrobial , computational biology , microbiology and biotechnology , drug resistance , herd , virology , genetics , antibiotics , computer science , gene , ecology , filter (signal processing) , computer vision

Reliable methods for monitoring antimicrobial resistance (AMR) in livestock and other reservoirs are essential to understand the trends, transmission and importance of agricultural resistance. Quantification of AMR is mostly done using culture-based techniques, but metagenomic read mapping shows promise for quantitative resistance monitoring.

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