Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
Author(s) -
Andrew E. Jaffe,
Peter Murakami,
Hwa-Jin Lee,
Jeffrey T. Leek,
M. Daniele Fallin,
Andrew P. Feinberg,
Rafael A. Irizarry
Publication year - 2012
Publication title -
international journal of epidemiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.406
H-Index - 208
eISSN - 1464-3685
pISSN - 0300-5771
DOI - 10.1093/ije/dyr238
Subject(s) - epigenetics , epidemiology , epigenesis , biology , genetics , dna methylation , computational biology , evolutionary biology , medicine , gene , gene expression
During the past 5 years, high-throughput technologies have been successfully used by epidemiology studies, but almost all have focused on sequence variation through genome-wide association studies (GWAS). Today, the study of other genomic events is becoming more common in large-scale epidemiological studies. Many of these, unlike the single-nucleotide polymorphism studied in GWAS, are continuous measures. In this context, the exercise of searching for regions of interest for disease is akin to the problems described in the statistical 'bump hunting' literature.
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