SeQuiLa-cov: A fast and scalable library for depth of coverage calculations | Zendy

Marek Wiewiórka | Zendy; Agnieszka Szmurło | Zendy; Wiktor Kuśmirek | Zendy; Tomasz Gambin | Zendy

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SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

Author(s) -

Marek Wiewiórka,

Agnieszka Szmurło,

Wiktor Kuśmirek,

Tomasz Gambin

Publication year - 2019

Publication title -

gigascience

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.947

H-Index - 54

ISSN - 2047-217X

DOI - 10.1093/gigascience/giz094

Subject(s) - computer science , scalability , preprocessor , speedup , exome , pipeline transport , distributed computing , data mining , parallel computing , exome sequencing , database , artificial intelligence , biology , biochemistry , environmental engineering , engineering , mutation , gene

Depth of coverage calculation is an important and computationally intensive preprocessing step in a variety of next-generation sequencing pipelines, including the analysis of RNA-sequencing data, detection of copy number variants, or quality control procedures.

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