Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur | Zendy

Saskia Hiltemann | Zendy; Stefan A. Boers | Zendy; Peter J. van der Spek | Zendy; Ruud Jansen | Zendy; John P. Hays | Zendy; Andrew Stubbs | Zendy

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Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur

Author(s) -

Saskia Hiltemann,

Stefan A. Boers,

Peter J. van der Spek,

Ruud Jansen,

John P. Hays,

Andrew Stubbs

Publication year - 2018

Publication title -

gigascience

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.947

H-Index - 54

ISSN - 2047-217X

DOI - 10.1093/gigascience/giy166

Subject(s) - workflow , computer science , galaxy , visualization , set (abstract data type) , interface (matter) , suite , data mining , database , astrophysics , operating system , physics , programming language , history , archaeology , bubble , maximum bubble pressure method

The determination of microbial communities using the mothur tool suite (https://www.mothur.org) is well established. However, mothur requires bioinformatics-based proficiency in order to perform calculations via the command-line. Galaxy is a project dedicated to providing a user-friendly web interface for such command-line tools (https://galaxyproject.org/).

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