Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Author(s) -
Ellie E. Armstrong,
Ryan W. Taylor,
Stefan Prost,
Peter Blinston,
Esther van der Meer,
Hillary Madzikanda,
Olivia Mufute,
Roseline MandisodzaChikerema,
John Stuelpnagel,
Claudio SilleroZubiri,
Dmitri A. Petrov
Publication year - 2018
Publication title -
gigascience
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.947
H-Index - 54
ISSN - 2047-217X
DOI - 10.1093/gigascience/giy124
Subject(s) - biology , endangered species , genome , genomics , population , loss of heterozygosity , evolutionary biology , conservation genetics , population genomics , sequence assembly , ecology , genetics , gene , microsatellite , allele , demography , gene expression , transcriptome , sociology , habitat
A high-quality reference genome assembly is a valuable tool for the study of non-model organisms. Genomic techniques can provide important insights about past population sizes and local adaptation and can aid in the development of breeding management plans. This information is important for fields such as conservation genetics, where endangered species require critical and immediate attention. However, funding for genomic-based methods can be sparse for conservation projects, as costs for general species management can consume budgets.
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