A reference gene set construction using RNA-seq of multiple tissues of Chinese giant salamander, Andrias davidianus | Zendy

Xiaofang Geng | Zendy; Wanshun Li | Zendy; Haitao Shang | Zendy; Qiang Gou | Zendy; Fuchun Zhang | Zendy; Xiayan Zang | Zendy; Benhua Zeng | Zendy; Jiang Li | Zendy; Ying Wa̅ng | Zendy; Ji Ma | Zendy; Jianlin Guo | Zendy; Jianbo Jian | Zendy; Bing Chen | Zendy; Zhigang Qiao | Zendy; Minghui Zhou | Zendy; Hong Wei | Zendy; Xiaodong Fang | Zendy; Cunshuan Xu | Zendy

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A reference gene set construction using RNA-seq of multiple tissues of Chinese giant salamander, Andrias davidianus

Author(s) -

Xiaofang Geng,

Wanshun Li,

Haitao Shang,

Qiang Gou,

Fuchun Zhang,

Xiayan Zang,

Benhua Zeng,

Jiang Li,

Ying Wa̅ng,

Ji Ma,

Jianlin Guo,

Jianbo Jian,

Bing Chen,

Zhigang Qiao,

Minghui Zhou,

Hong Wei,

Xiaodong Fang,

Cunshuan Xu

Publication year - 2017

Publication title -

gigascience

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.947

H-Index - 54

ISSN - 2047-217X

DOI - 10.1093/gigascience/gix006

Subject(s) - salamander , computational biology , gene , biology , set (abstract data type) , rna seq , zoology , computer science , genetics , transcriptome , gene expression , programming language

Chinese giant salamander (CGS) is the largest extant amphibian species in the world. Owing to its evolutionary position and four peculiar phenomenon of life (longevity, starvation tolerance, regenerative ability, and hatch without sunshine), it is an invaluable model species for research. However, lack of genomic resources leads to fewer study progresses in these fields, due to its huge genome of ∼50 GB making it extremely difficult to be assembled.

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