Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Author(s) -
Nathan C. Sheffield,
Michał Stolarczyk,
Vincent Reuter,
André F. Rendeiro
Publication year - 2021
Publication title -
gigascience
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.947
H-Index - 54
ISSN - 2047-217X
DOI - 10.1093/gigascience/giab077
Subject(s) - modular design , data science , computer science , big data , data mining , programming language
Organizing and annotating biological sample data is critical in data-intensive bioinformatics. Unfortunately, metadata formats from a data provider are often incompatible with requirements of a processing tool. There is no broadly accepted standard to organize metadata across biological projects and bioinformatics tools, restricting the portability and reusability of both annotated datasets and analysis software.
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