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Two high-qualityde novogenomes from single ethanol-preserved specimens of tiny metazoans (Collembola)
Author(s) -
Clemént Schneider,
Christian Woehle,
Carola Greve,
Cyrille A. D’Haese,
Magnus Wolf,
Michael Hiller,
Axel Janke,
Miklós Bálint,
Bruno Hüettel
Publication year - 2021
Publication title -
gigascience
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.947
H-Index - 54
ISSN - 2047-217X
DOI - 10.1093/gigascience/giab035
Subject(s) - genome , biology , dna sequencing , genomics , evolutionary biology , phylogenetics , sequence assembly , biodiversity , computational biology , gene , genetics , ecology , gene expression , transcriptome
Genome sequencing of all known eukaryotes on Earth promises unprecedented advances in biological sciences and in biodiversity-related applied fields such as environmental management and natural product research. Advances in long-read DNA sequencing make it feasible to generate high-quality genomes for many non-genetic model species. However, long-read sequencing today relies on sizable quantities of high-quality, high molecular weight DNA, which is mostly obtained from fresh tissues. This is a challenge for biodiversity genomics of most metazoan species, which are tiny and need to be preserved immediately after collection. Here we present de novo genomes of 2 species of submillimeter Collembola. For each, we prepared the sequencing library from high molecular weight DNA extracted from a single specimen and using a novel ultra-low input protocol from Pacific Biosciences. This protocol requires a DNA input of only 5 ng, permitted by a whole-genome amplification step.

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