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Fluorescence microscopy datasets for training deep neural networks
Author(s) -
Guy M. Hagen,
Justin Bendesky,
Rosa Machado,
Tram-Anh Nguyen,
T. Ashok Kumar,
Jonathan Ventura
Publication year - 2021
Publication title -
gigascience
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.947
H-Index - 54
ISSN - 2047-217X
DOI - 10.1093/gigascience/giab032
Subject(s) - photobleaching , convolutional neural network , artificial intelligence , microscopy , computer science , deep learning , fluorescence , phototoxicity , fluorescence microscope , training set , artificial neural network , noise (video) , pattern recognition (psychology) , machine learning , optics , chemistry , physics , biochemistry , in vitro , image (mathematics)
Fluorescence microscopy is an important technique in many areas of biological research. Two factors that limit the usefulness and performance of fluorescence microscopy are photobleaching of fluorescent probes during imaging and, when imaging live cells, phototoxicity caused by light exposure. Recently developed methods in machine learning are able to greatly improve the signal-to-noise ratio of acquired images. This allows researchers to record images with much shorter exposure times, which in turn minimizes photobleaching and phototoxicity by reducing the dose of light reaching the sample.

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