Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods | Zendy

Damien Courtine | Zendy; Jan Provazník | Zendy; Jérôme Reboul | Zendy; Guillaume Blanc | Zendy; Vladimı́r Beneš | Zendy; Jonathan J. Ewbank | Zendy

Open Access

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

Author(s) -

Damien Courtine,

Jan Provazník,

Jérôme Reboul,

Guillaume Blanc,

Vladimı́r Beneš,

Jonathan J. Ewbank

Publication year - 2020

Publication title -

gigascience

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.947

H-Index - 54

ISSN - 2047-217X

DOI - 10.1093/gigascience/giaa099

Subject(s) - nanopore sequencing , genome , nanopore , biology , caenorhabditis elegans , computational biology , dna sequencing , sequence assembly , chromosome , genomics , gene , evolutionary biology , genetics , nanotechnology , gene expression , materials science , transcriptome

Long-read sequencing is increasingly being used to determine eukaryotic genomes. We used nanopore technology to generate chromosome-level assemblies for 3 different strains of Drechmeria coniospora, a nematophagous fungus used extensively in the study of innate immunity in Caenorhabditis elegans.

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