HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes | Zendy

Jerven Bolleman | Zendy; Edouard de Castro | Zendy; Delphine Baratin | Zendy; Sébastien Géhant | Zendy; B. A. Cuche | Zendy; Andrea Auchincloss | Zendy; Elisabeth Coudert | Zendy; Chantal Hulo | Zendy; Patrick Masson | Zendy; Ivo Pedruzzi | Zendy; Catherine Rivoire | Zendy; Ioannis Xénarios | Zendy; Nicole Redaschi | Zendy; Alan Bridge | Zendy

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HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

Author(s) -

Jerven Bolleman,

Edouard de Castro,

Delphine Baratin,

Sébastien Géhant,

B. A. Cuche,

Andrea Auchincloss,

Elisabeth Coudert,

Chantal Hulo,

Patrick Masson,

Ivo Pedruzzi,

Catherine Rivoire,

Ioannis Xénarios,

Nicole Redaschi,

Alan Bridge

Publication year - 2020

Publication title -

gigascience

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.947

H-Index - 54

ISSN - 2047-217X

DOI - 10.1093/gigascience/giaa003

Subject(s) - sparql , computer science , rdf , annotation , uniprot , pipeline (software) , genome project , information retrieval , identifier , file transfer protocol , semantic web , world wide web , database , genome , programming language , biology , artificial intelligence , the internet , biochemistry , gene

Genome and proteome annotation pipelines are generally custom built and not easily reusable by other groups. This leads to duplication of effort, increased costs, and suboptimal annotation quality. One way to address these issues is to encourage the adoption of annotation standards and technological solutions that enable the sharing of biological knowledge and tools for genome and proteome annotation.

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