Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae | Zendy

Zhiyuan Zhang | Zendy; Guozhong Chen | Zendy; Jun Hu | Zendy; Wajid Hussain | Zendy; Fenxia Fan | Zendy; Yalin Yang | Zendy; Zhigang Zhou | Zendy; Xiaodong Fang | Zendy; Jun Zhu | Zendy; WeiHua Chen | Zendy; Zhi Liu | Zendy

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Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae

Author(s) -

Zhiyuan Zhang,

Guozhong Chen,

Jun Hu,

Wajid Hussain,

Fenxia Fan,

Yalin Yang,

Zhigang Zhou,

Xiaodong Fang,

Jun Zhu,

WeiHua Chen,

Zhi Liu

Publication year - 2019

Publication title -

database

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 1.406

H-Index - 62

ISSN - 1758-0463

DOI - 10.1093/database/baz069

Subject(s) - vibrio cholerae , transcriptome , biology , gene , microarray analysis techniques , cholera , rna seq , computational biology , cholera toxin , operon , microarray , database , gene expression , genetics , microbiology and biotechnology , bacteria , computer science , escherichia coli

Gram-negative bacterium Vibrio cholerae is the causative agent of cholera, a life-threatening diarrheal disease. During its infectious cycle, V. cholerae routinely switches niches between aquatic environment and host gastrointestinal tract, in which V. cholerae modulates its transcriptome pattern accordingly for better survival and proliferation. A comprehensive resource for V. cholerae transcriptome will be helpful for cholera research, including prevention, diagnosis and intervention strategies. In this study, we constructed a microarray and RNA-seq database of V. cholerae (Mr.Vc), containing gene transcriptional expression data of 145 experimental conditions of V. cholerae from various sources, covering 25 937 entries of differentially expressed genes. In addition, we collected relevant information including gene annotation, operons they may belong to and possible interaction partners of their protein products. With Mr.Vc, users can easily find transcriptome data they are interested in, such as the experimental conditions in which a gene of interest was differentially expressed in, or all genes that were differentially expressed in an experimental condition. We believe that Mr.Vc database is a comprehensive data repository dedicated to V. cholerae and could be a useful resource for all researchers in related fields. Mr.Vc is available for free at http://bioinfo.life.hust.edu.cn/mrvc.

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