PlantCAZyme: a database for plant carbohydrate-active enzymes | Zendy

Alexander Ekström | Zendy; Rahil Taujale | Zendy; Nathan McGinn | Zendy; Yanbin Yin | Zendy

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PlantCAZyme: a database for plant carbohydrate-active enzymes

Author(s) -

Alexander Ekström,

Rahil Taujale,

Nathan McGinn,

Yanbin Yin

Publication year - 2014

Publication title -

database

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 1.406

H-Index - 62

ISSN - 1758-0463

DOI - 10.1093/database/bau079

Subject(s) - annotation , download , upload , biology , database , sequence database , phylogenetic tree , sequence (biology) , computational biology , computer science , bioinformatics , world wide web , genetics , gene

PlantCAZyme is a database built upon dbCAN (database for automated carbohydrate active enzyme annotation), aiming to provide pre-computed sequence and annotation data of carbohydrate active enzymes (CAZymes) to plant carbohydrate and bioenergy research communities. The current version contains data of 43,790 CAZymes of 159 protein families from 35 plants (including angiosperms, gymnosperms, lycophyte and bryophyte mosses) and chlorophyte algae with fully sequenced genomes. Useful features of the database include: (i) a BLAST server and a HMMER server that allow users to search against our pre-computed sequence data for annotation purpose, (ii) a download page to allow batch downloading data of a specific CAZyme family or species and (iii) protein browse pages to provide an easy access to the most comprehensive sequence and annotation data.

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