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ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures
Author(s) -
Divya Mehta,
Paras Anand,
Vinod Kumar,
Amit Joshi,
Deepika Mathur,
Sandeep Singh,
Abhishek Tuknait,
Kumardeep Chaudhary,
S. K. Gautam,
Arvind Gautam,
Grish C. Varshney,
Gajendra P. S. Raghava
Publication year - 2014
Publication title -
database
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.406
H-Index - 62
ISSN - 1758-0463
DOI - 10.1093/database/bau051
Subject(s) - antiparasitic , peptide , antiparasitic agent , amino acid , peptide sequence , pubchem , biology , leishmania , computational biology , biochemistry , chemistry , computer science , parasite hosting , world wide web , pharmacology , medicine , pathology , gene
ParaPep is a repository of antiparasitic peptides, which provides comprehensive information related to experimentally validated antiparasitic peptide sequences and their structures. The data were collected and compiled from published research papers, patents and from various databases. The current release of ParaPep holds 863 entries among which 519 are unique peptides. In addition to peptides having natural amino acids, ParaPep also consists of peptides having d-amino acids and chemically modified residues. In ParaPep, most of the peptides have been evaluated for growth inhibition of various species of Plasmodium, Leishmania and Trypanosoma. We have provided comprehensive information about these peptides that include peptide sequence, chemical modifications, stereochemistry, antiparasitic activity, origin, nature of peptide, assay types, type of parasite, mode of action and hemolytic activity. Structures of peptides consisting of natural, as well as modified amino acids have been determined using state-of-the-art software, PEPstr. To facilitate users, various user-friendly web tools, for data fetching, analysis and browsing, have been integrated. We hope that ParaPep will be advantageous in designing therapeutic peptides against parasitic diseases. Database URL: http://crdd.osdd.net/raghava/parapep/

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