The BioMart interface to the eMouseAtlas gene expression database EMAGE | Zendy

Peter Stevenson | Zendy; Lorna Richardson | Zendy; Shanmugasundaram Venkataraman | Zendy; Yiya Yang | Zendy; Richard Baldock | Zendy

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The BioMart interface to the eMouseAtlas gene expression database EMAGE

Author(s) -

Peter Stevenson,

Lorna Richardson,

Shanmugasundaram Venkataraman,

Yiya Yang,

Richard Baldock

Publication year - 2011

Publication title -

database

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 1.406

H-Index - 62

ISSN - 1758-0463

DOI - 10.1093/database/bar029

Subject(s) - interface (matter) , computer science , scope (computer science) , database , user interface , expression (computer science) , implementation , structuring , access method , data access , information retrieval , operating system , programming language , bubble , finance , maximum bubble pressure method , economics

Here, we describe the BioMart interface to the eMouseAtlas gene expression database EMAGE. EMAGE is a spatiotemporal database of in situ gene expression patterns in the developing mouse embryo. BioMart provides a generic web query interface and programmable access using web services. The BioMart interface extends access to EMAGE via a powerful method of structuring complex queries and one with which users may already be familiar with from other BioMart implementations. The interface is structured into several data sets providing the user with comprehensive query access to the EMAGE data. The federated nature of BioMart allows scope for integration and cross querying of EMAGE with other similar BioMarts.

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