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MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
Author(s) -
Olof Asplund,
Johan Rung,
Leif Groop,
Rashmi B. Prasad,
Ola Hansson
Publication year - 2020
Publication title -
database
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.406
H-Index - 62
ISSN - 1758-0463
DOI - 10.1093/database/baaa111
Subject(s) - skeletal muscle , world wide web , service (business) , expression (computer science) , gene expression , gene , the internet , computer science , computational biology , biology , genetics , business , anatomy , marketing , programming language
MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).

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