Finding enzyme cofactors in Protein Data Bank | Zendy

Abhik Mukhopadhyay | Zendy; Neera Borkakoti | Zendy; Lukáš Pravda | Zendy; Jonathan D. Tyzack | Zendy; Janet M. Thornton | Zendy; Sameer Velankar | Zendy

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Finding enzyme cofactors in Protein Data Bank

Author(s) -

Abhik Mukhopadhyay,

Neera Borkakoti,

Lukáš Pravda,

Jonathan D. Tyzack,

Janet M. Thornton,

Sameer Velankar

Publication year - 2019

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btz115

Subject(s) - cofactor , protein data bank (rcsb pdb) , protein data bank , pipeline (software) , enzyme , computer science , biochemistry , computational biology , chemistry , protein structure , biology , programming language

Cofactors are essential for many enzyme reactions. The Protein Data Bank (PDB) contains >67 000 entries containing enzyme structures, many with bound cofactor or cofactor-like molecules. This work aims to identify and categorize these small molecules in the PDB and make it easier to find them.

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