Multimodal network diffusion predicts future disease–gene–chemical associations
Author(s) -
Chih-Hsu Lin,
Daniel M. Konecki,
Meng Liu,
Stephen J. Wilson,
Huda Nassar,
Angela D. Wilkins,
David F. Gleich,
Olivier Lichtarge
Publication year - 2018
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bty858
Subject(s) - association (psychology) , computer science , field (mathematics) , data mining , genetic association , source code , machine learning , diffusion , gene , biology , mathematics , psychology , genetics , thermodynamics , physics , genotype , single nucleotide polymorphism , pure mathematics , psychotherapist , operating system
Precision medicine is an emerging field with hopes to improve patient treatment and reduce morbidity and mortality. To these ends, computational approaches have predicted associations among genes, chemicals and diseases. Such efforts, however, were often limited to using just some available association types. This lowers prediction coverage and, since prior evidence shows that integrating heterogeneous data is likely beneficial, it may limit accuracy. Therefore, we systematically tested whether using more association types improves prediction.
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