VARAN-GIE: curation of genomic interval sets | Zendy

Niko Popitsch | Zendy

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VARAN-GIE: curation of genomic interval sets

Author(s) -

Niko Popitsch

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty723

Subject(s) - merge (version control) , computer science , annotation , genomics , data curation , source code , interval (graph theory) , genome , world wide web , programming language , information retrieval , biology , genetics , artificial intelligence , gene , mathematics , combinatorics

Genomic interval sets are fundamental elements of genome annotation and are the output of countless bioinformatics applications. Nevertheless, tool support for the manual curation of these data is currently limited. We developed VARAN-GIE, an extension of the popular Integrative Genomics Viewer (IGV) that adds functionality to edit, annotate and merge genomic interval sets. Data can easily be shared with other users and imported/exported from/to multiple common data formats.

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